Polymers are commonly used in industry for packaging applications and as protective coatings but are sometimes unsuitable to use due to their low surface energies. For these latter applications, surface modification is usually necessary to improve wettability, printability and adhesive properties. In the past decades, plasma surface treatment of polymers has been extensively studied and different treatment conditions have been investigated. However, the influence of polymer crystallinity on plasma treatment effects is not well-known and therefore this study focuses on plasma treatment of PET foils with different degrees of crystallinity. The different PET foils are treated with a DBD discharge operating in air at medium pressure and the effect of polymer crystallinity on the treatment efficiency is studied in detail using contact angle measurements and atomic force microscopy (AFM). Also the ageing behavior of the different types of plasma-treated samples is investigated in this work. Results clearly show that the crystallinity of the PET foil influences both the plasma treatment effect as well as the ageing process of the samples. AFM analysis indicated that the DBD plasma homogeneously etches the surface of the amorphous PET foil resulting in smoother surfaces after plasma treatment, while for the more crystalline PET foil the etching effect is more randomly leading to rougher surfaces. As a result, amorphous polymer regions are most likely more prone to plasma etching than crystalline regions.