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String matching has become essential and widely applied in modern computer applications, especially with explosive data scale. As a classic fast and exact single pattern matching algorithm, Knuth-Morris-Pratt (KMP) algorithm has been demonstrated in network security and computational biology. However, with the increasing amount of data in the modern society, it becomes increasing important and essential...
The next generation genome sequencing problem with short (long) reads is an emerging field in numerous scientific and big data research domains. However, data sizes and ease of access for scientific researchers are growing and most current methodologies rely on one acceleration approach and so cannot meet the requirements imposed by explosive data scales and complexities. In this paper, we propose...
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