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Systems biology aims to facilitate the understanding of complex interactions between components in biological systems. Petri nets (PN), and in particular Coloured Petri Nets (CPN) have been demonstrated to be a suitable formalism for modelling biological systems and building computational models over multiple spatial and temporal scales. To explore the complex and high-dimensional solution space over...
With the data explosion in biology visualisation techniques are of paramount importance for further progress. In this paper, we present a framework to characterise the visualisation process. We identify two main data types and introduce structure comparison data and gene expression data as representatives, which serve as running examples throughout. Next, we review various distance measures and develop...
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