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The architecture of the Microsoft Catapult II cloud places the accelerator (FPGA) as a bump-in-the-wire on the way to the network and thus promises a dramatic reduction in latency as layers of hardware and software are avoided. We demonstrate this capability with an implementation of the 3D FFT. Next we examine phased application elasticity, i.e., the use of a reduced set of nodes for some phases...
Molecular Dynamics is notable in High Performance Computing in that it is both sufficiently critical, and not well-enough served by off-the-shelf processors, that it has been continually targeted with domain-specific architectures. These range from the common, i.e., use of accelerators, to FPGA-centric servers describe here, to full-scale ASIC-based systems (e.g., the Anton processor). The strict...
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