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Genome identification is an emerging area of interest due to the study of environmental DNA samples. We show that performance approaches 50% for classifying 500 bp fragments when using 12 mer features, but more importantly, the performance linearly increases for large N. Secondly, we determine that an inverted TF-IDF measure performs 16% better when only using 80% of the words, as opposed to taking...
The compressive sensing microarrays design was proposed by Sheikh et. al as an efficient way of sensing organisms in a given environment such as air, water or soil sample. However, Sheik et. al probe candidates are extracted from the shortest sequences among any given group of organisms. This implies that they have a limited search space for the probe candidates. Probes picked in such a way must not...
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