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Protein function is highly correlated with its three-dimensional conformation in order to interact with others proteins, ligands, substrates, inhibitors, etc. Studies on binding site and protein function have been investigated to understand the mechanism of protein activity. The role of binding site can be characterized by the presence of stable regions and flexible regions. Furthermore, protein stability...
Sequence conservation related to protein function has been discovered via protein sequence alignment and pattern mining. In contrast, our motivation is to mine structure conservation via frequent itemset mining from the viewpoint of structure. In order to describe local structure, neighborhood residue sphere (NRS) is proposed, which is a sphere with 10 A radius of each residue with the combination...
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