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Many scientific applications take a very long time to execute on general purpose processors. Speedups can be obtained by using specialized hardware in conjunction with the processors. FPGA based accelerators are known to be effective for reducing the execution time of many scientific applications. Since FPGAs are configurable, they can be customized to implement a variety of processing elements as...
Modern FPGAs consist of a number of Hard Embedded Blocks (HEBs) like BRAMs, DSPs, PCI controllers, etc. for performing specialized operations/functions. This helps in developing efficient architectures for accelerating compute intensive kernels. Computational genomics is a fairly recent domain which helps in the understanding of the biological properties of an organism with applications in medicine,...
Three dimensional Fast Fourier Transform (3D-FFT) is popularly used in many scientific applications in various domains like image processing, bioinformatics and molecular dynamics. Typically 3D-FFT computation takes significant part of the execution time of these applications. In order to speedup these applications, it becomes necessary to accelerate 3D-FFT computation. 3D-FFT can be accelerated using...
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