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Rice is a model system for crop genomics studies. Much of the early work on rice genomics focused on analyzing genome-wide genetic variation to further understand rice gene functions in agronomic traits and to generate data and resources for rice research. The advent of next-generation high-throughput DNA sequencing technologies and the completion of high-quality reference genome sequences have enabled...
Many studies have been proposed to identify gene makers that are associated with cancers, but the found markers are approach dependent. For example, the results are correlated with classifiers in supervised feature selection, and many of them didn't consider the influences of other factors, such as the grades or stages of cancers. In this study, we proposed a supervised SVD approach to extract the...
As the international efforts to sequence the rice genome are completed, an immediate challenge and opportunity is to comprehensively and accurately define all transcription units in the rice genome. Here we describe a strategy of using high-density oligonucleotide tiling-path microarrays to map transcription of the japonica rice genome. In a pilot experiment to test this approach, one array representing...
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