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Sequence alignment is a fundamental task for computational genomics research. We develop G-Aligner, which adopts the GPU as a hardware accelerator to speed up the sequence alignment process. A leading CPU-based alignment tool is based on the Bi-BWT index; however, a direct implementation of this algorithm on the GPU cannot fully utilize the hardware power due to its irregular algorithmic structure...
Database queries, in particular, event-driven continuous queries, are useful for many pervasive computing applications, such as video surveillance. In order to enable these applications, we have developed a pervasive query processing framework called Aorta. Unlike traditional database systems, a pervasive query processor requires systems support for managing a large number of networked, heterogeneous...
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