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This paper presents a detailed analytical framework for errors in DNA self-assembly using synthesized tile sets for template manufacturing. Previous works have shown that due to the smaller cardinality of the employed tile set, a synthesized aggregate has a higher (lower) error rate than a non-synthesized aggregate at high (low) tile concentration; moreover, in the former type of aggregate errors...
DNA self-assembly has been advocated as a bottom-up manufacturing technology (as applicable in the nano scales) and for algorithmic computation. However, previous research did not address the issue of designing a tile set for an arbitrary target pattern (as to ensure periodic repetition in its assembly) of finite size. This paper considers the synthesis of tile sets for DNA self-assembly and analyzes...
As a possible technology for bottom-up manufacturing, DNA self-assembly requires tolerance to different errors. Among the methods for reducing the error rate, snake tile sets utilize a square block of even dimension of tiles (i.e., 2k ? 2k). In this paper, an odd-sized square block (i.e., (2k-1)?(2k-1)) is proposed as basis for snake tile sets. In comparison with all other tile sets, the proposed...
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