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Background De novo heterozygous assembly is an ongoing challenge requiring improved assembly approaches. In this study, three strategies were used to develop de novo Vitis vinifera ‘Sultanina’ genome assemblies for comparison with the inbred V. vinifera (PN40024 12X.v2) reference genome and a published Sultanina ALLPATHS-LG assembly (AP). The strategies were: 1) a default PLATANUS assembly (PLAT_d)...
Vitis vinifera cultivars are widely used for wine, table and raisin production throughout the world. A reference genome for an inbred line is available; however, standard cultivars are highly heterozygous. The heterozygosity makes it difficult to select an optimal assembler for de novo genome assembly. Here we have compared de novo genome assembly of the V. vinifera cv. Sultanina, a pivotal table...
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