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Demanding for efficient compression and storage of DNA sequences has been rising with the rapid growth of DNA sequencing technologies. Existing reference-based algorithms map all patterns to regions found in the reference sequence, which lead to redundancy of incomplete similarity. This paper proposes an efficient reference-based method for DNA sequence compression that integrates FM-index and complementary...
This paper proposes a bi-directional context modeling (BCM) technique for reference-free genome sequence compression, which constructs its contexts by combining arbitrary predicted symbols in two directions corresponding to approximate repeats and non-repeat regions. Thus, BCM can sequentially predict DNA sequences with weighted conditional probabilities that simultaneously exploit the correlations...
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