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Peptide-spectrum matching is one of the most time-consuming portion of the database search method for assignment of tandem mass spectra to peptides. In this study, we develop a parallel algorithm for peptide-spectrum matching using Single-Instruction Multiple-Data (SIMD) instructions. Unlike other parallel algorithms in peptide-spectrum matching, our algorithm parallelizes the computation of matches...
This paper presents the design of a new web browser, the Tree Trailblazer, which allows users to browse the web while maintaining a visual record of their exploration path, or trail, through the information space. This design enhances the backtracking aspects of web browsing over current designs by providing visual cues regarding the pages related to the page being viewed, providing users with an...
We consider the yield languages of synchronized tree automata, called the synchronized context-free (SCF) languages. We show that their language family coincides with the family of ET0L languages using both studied types of synchronization. Furthermore, we examine a generalization of SCF grammars, the block-synchronized context-free (BSCF) grammars and determine that their generated language family...
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