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DNA edit metric codes are used as labels to track the origin of sequence data. This study is the first to treat sophisticated decoders for these error-correcting codes. Side effect machines can provide efficient decoding algorithms for such codes. Two methods for automatically producing decoding algorithms are presented. Side Effect Machines (SEMs), generalizations of finite state automata, are used...
Cartesian genetic programming uses a directed acyclic graph structure rather than a tree structure for its representation of evolvable programs or formulas. In this paper a derivative of Cartesian genetic programming called a function stack is introduced and trained to play the iterated prisoner's dilemma with an evolutionary algorithm. Function stacks differ from Cartesian genetic programming in...
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