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In this paper, a flower pollination algorithm (FPA) for the multiple sequence alignment (MSA) problem has been proposed. The FPA is a nature-inspired metaheuristic algorithm based on the pollination process of flowers flowering plants. MSA is an alignment of three or more sequences. MSA is used in many applications such as protein structure prediction, phylogenetic analysis, and genome primer identification...
This paper presents the use of the ‘Linear-PSO with Binary Search’ (LPBS) algorithm for discovering motifs, especially species-specific motifs. In this study, two samples from different fragments of ‘mitochondrial cytochrome C oxidase subunit I’ (COI/COX1) were collected from the Genbank online database. DNA sequences for the first sample are a mix of different fragments of COI and the second sample...
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