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Protein structure prediction by using bioinformatics can involve sequence similarity searches, multiple sequence alignments, identification and characterization of domains, secondary structure prediction. The secondary and tertiary structure of stearoyl ACP desaturase was predicted by bioinformatics methods from the mRNA sequence. The stearoyl ACP protein, as a member of plant fatty acid synthesis...
Amino acids (AAs) pairs in protein sheets structures have turned out to be important in studying protein tertiary structures and protein folding pathways. Most existing software tools are sophisticated in visualizing and manipulating protein 3-D structures. However, these tools are inconvenient to retrieve strands alignment information and are not so intuitive to illustrate the AAs pairs on strands...
With the increase of sequence information, many methods have been used in detecting sequence similarities. In order to avoid the shortcomings of the traditional method based on sequences alignment such as high time and space complexity, component vector method has been successfully used in the reconstruction of phylogenetic tree using genome (proteome) or conserved molecular sequences. With the aim...
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