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Due to the shift from software-as-a-product (SaaP) to software-as-a-service (SaaS), software components that were developed to run in a single address space must increasingly be accessed remotely across the network. Distribution middleware is frequently used to facilitate this transition. Yet a range of middleware platforms exist, and there are few existing guidelines to help the programmer choose...
The Web service description language defines a service as a procedure whose inputs and outputs are arbitrarily structured XML data values, sometimes called documents. In this paper we argue that document-oriented interfaces can be viewed as batches of calls to finer-grained object-oriented interfaces. Turning this correspondence around, we show that flexible documents can be specified by converting...
Although distributed object systems, including RMI and CORBA, enable object-oriented programs to be easily distributed across a network, achieving acceptable performance usually requires client-specific optimization of server interfaces, making such systems difficult to maintain and evolve. Automatic optimization techniques, including Batched Futures and Communication Restructuring, do not work as...
Faced with the challenges of understanding the source code of a program, software developers are assisted by a wealth of software visualization research. This work explores how visualization can be supplemented by sonification as a cognitive tool for code comprehension. By engaging the programmer's auditory senses, sonification can improve the utility of program comprehension tools. This paper reports...
In a grid application, some requirements may change while the execution is in progress. This paper presents in-vivo enhancement--updating running grid applications to facilitate their perfective maintenance. Because applications in this domain are not only typically long-running, but also time-consuming to deploy, we propose a in-vivo enhancement can change a running application flexibly and efficiently...
We present an automated approach for marshaling C++ data structures in high performance computing (HPC) applications. Our approach utilizes a graphical editor through which the user can express a subset of an object's state to be marshaled and sent across a network. Our tool, MPI serializer, then automatically generates efficient marshaling and unmarshaling code for use with the message passing interface...
We present natural remote method invocation (NRMI): a middleware mechanism that provides a fully general implementation of call-by-copy-restore semantics for arbitrary linked data structures, used as parameters in remote procedure calls. Call-by-copy-restore offers a more natural programming model for distributed systems than traditional call-by-copy middleware, enabling remote calls to behave much...
Bioinformaticists use the Basic Local Alignment Search Tool (BLAST) to characterize an unknown sequence by comparing it against a database of known sequences, thus detecting evolutionary relationships and biological properties. mpiBLAST is a widely-used, high-performance, open-source parallelization of BLAST that runs on a computer cluster delivering super-linear speedups. However, the Achilles heel...
The current and near future of the computing industry is one of multi-core and multi-processor technology. Most existing sequence-search tools have been designed with a focus on single-core, single-processor systems. This discrepancy between software design and hardware architecture substantially hinders sequence-search performance by not allowing full utilization of the hardware. This paper presents...
Commercial of-the-shelf (COTS) code generators have become an integral part of modern commercial software development. Programmers use code generators to facilitate many tedious and error-prone software development tasks including language processing, XML data binding, graphical component creation, and middleware deployment. Despite the convenience offered by code generators, the generated code is...
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