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Serinicoccus sp. JLT9 was a novel rare actinomycete, isolated from the shallow-sea hydrothermal system. Here, we present the complete genome sequence of Serinicoccus sp. JLT9, which consists of 3,610,932bp with a GC content of 72.43%. The genome data provides insight into microbial adaption to the shallow-sea hydrothermal system and facilitates the discovery of natural compounds in the future.
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