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Some research has suggested that patches of six constitute an important amino acid window length in proteins for conveying information. We present database evidence that supports this conjecture, as well as additional recurrence-based data that characterization and quantification of these words affect the folding/aggregation features of proteins. Other indirect evidence is presented and discussed.
Stochastic resonance is usually found in nonlinear dynamical systems. Spatial stochastic resonance, however, has also been described. We present a case of spatial stochastic resonance in the sequence hydrophobicities of spider silk proteins, and briefly describe its putative significance.
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