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DNA sequences consist of four types of nucleotides, and converting the DNA sequence into a numerical sequence is an important task of the study of DNA sequences. In this paper, we propose an improved inter-nucleotide distances method which combines with Euclidean distance to analyze phylogenetic relationship of the 64 vertebrate complete mitochondrial genomes and construct corresponding phylogenetic...
We use the Lempel-Ziv complexity method to investigate effects of amino acid classification on prediction of protein structural classes. First, we find that contributions of amino acid classification are differential for predicting protein structural classes and even the performances of some amino acid classification are better than that without using the amino acid classification. This inspires us...
Recognition of coding sequences in a complete genome is animportant problem in DNA sequence analysis. Their rapid and accurate recognition contributes to various relevant research and application. In this paper, we aim to distinguish the coding sequences from the non-coding sequences in a prokaryote complete genome. We select a data set of 51 available bacterial genomes. Then, we use the global descriptor...
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