Standard infrared spectroscopy techniques are well‐developed and widely used. However, they typically require milligrams of sample and can involve time‐consuming sample preparation. A promising alternative is represented by nanomechanical infrared spectroscopy (NAM‐IR) based on the photothermal response of a nanomechanical resonator, which enables the chemical analysis of picograms of analyte directly from a liquid solution in only a few minutes. Herein, we present NAM‐IR using perforated membranes (filters). The method was tested with the pharmaceutical compound indomethacin to successfully perform a chemical and morphological analysis on roughly 100 pg of sample. With an absolute estimated sensitivity of 109±15 fg, the presented method is suitable for ultrasensitive vibrational spectroscopy.