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Biological sequence alignment is time-consuming tasks. This is due to its repetitive alignment matrix scores calculations. The SSEARCH35 is the well-known ‘software-only’ sequence homology search tool. However, its sequential execution requires quadratic time complexity even when the software is executed in a sophisticated computer. Alternatively, sequence alignment is executed in hardware such as...
A deoxyribonucleic acid (DNA) microarray is a powerful tool that is widely used in genetics to monitor the expression levels of thousands of genes in parallel. Gridding, segmentation and intensity extraction is the process of gene expression. In the process of gene expression, gridding process information leading to dig their own DNA and provide coordinates for each point. Gridding can be implemented...
Deoxyribonucleic Acid (DNA) sequence alignment is essentially a way of comparing two or more DNA sequences with aim to find regions of similarities among them. The Smith-Waterman (SW) algorithm is a local alignment algorithm which is able to identify mutation in DNA sequences. However, the aforementioned algorithm tends to be slower in computation of long DNA sequences. Over decades ago, Field Programmable...
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