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The bioinformatics analysis of D15 gene, encoding the 99-kDa major surface antigen D15 of Riemerella anatipestifer, the etiological agent of septicemia anserum exsudativa, was first provided in this article. The program DNAStar, ORF Finder, CDD, ClustalX, MEGA, NetNGlyc, NetOGlyc as well as NetPhos were performed to predict the characteristic of the D15 gene in physicochemical, construction of phylogenetic...
The bioinformatics analysis of mfs_1 gene from Riemerella anatipestifer (RA) by kinds of bioinformatics software, such as BLASTN2.2.14, ORF Finder, BLASTP and FASTA procedures, DNAstar 7.0, Chips and Cusp programs of the EMBOSS, SignalP V4.0 Server, ProtScale, BepiPred1.0 Server, PredictProtein Sever, PSORT and MEGA software. Importing the sequence into all of these bioinformatics software in the...
The synonymous codon usage in the UL41 gene of duck plague virus (DPV) and 21 reference herpesviruses have been investigated by using the CodonW 1.4 program, CUSP (create a codon usage table) program and CHIPS(calculated ENC value) of EMBOSS (The European Molecular Biology Open Software Suite). The results reveals that the synonymous codons with A and T at the third codon positon have widely usage...
D15 protein which encoded by the RA-D15 gene was one of the Riemerella anatipestifer's surface antigens. The precursor RA-D15 protein was encoded by 859 amino acid residues, which was 99-kDa in theoretical molecular weight. The putative protein had no signal peptide, 32 potential antigenic determinants. RA-D15 protein was a type membrane protein that could be divided into 3 distinct functional domains:...
This report showed some physico-chemical properties and structural features about UL41 protein predicted by some software and on-line tools. The analysis showed both the signal peptide and the trans membrance region are not found. Meanwhile, the protein has twenty-four potential phosphorylation sites. In addition, the protein has more hydrophilic amine acid districts than hydrophobic districts and...
The Duck Plague Virus (DPV) is the causative agent of Duck plague, which causes significant economic losses in the commercial duck industry all over the world. Our laboratory had identified and sequenced the DPV UL41 gene. Bioinformatics analysis of DPV UL41 gene were performed by some software and online tools. The results showed that GC content of duck plague virus UL41 gene was 42.42%, which encoded...
Glycoprotein K encoded by the DEV-UL53 gene is one of the DEV envelope glycoproteins. Like most members of the alphaherpesvirinae, the genes in the UL region of its genome are well conserved, which means that the major DEV envelope glycoprotein K possessing similar functions of envelope glycoprotein K of alphaherpesvirinae plays an essential role in viral replication and cell fusion. Glycoprotein...
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