Search results for: David W. Hoffman

Items from 1 to 20 out of 26 results

article

Structural and kinetic characterization of two 4-oxalocrotonate tautomerases in Methylibium petroleiphilum strain PM1

Cassidy R. Terrell, Elizabeth A. Burks, Christian P. Whitman, David W. Hoffman

Archives of Biochemistry and Biophysics > 2013 > 537 > 1 > 113-124

Methylibium petroleiphilum strain PM1 uses various petroleum products including the fuel additive methyl tert-butyl ether and straight chain and aromatic hydrocarbons as sole carbon and energy sources. It has two operons, dmpI and dmpII, that code for the enzymes in a pair of parallel meta-fission pathways. In order to understand the roles of the pathways, the 4-oxalocrotonate tautomerase (4-OT) isozyme...

chapter

Semi-transparent photovoltaic devices for smart window applications

Soo Kim, Yu Nung Huang, F. Ameena, David W. Hoffman, more

2012 38th IEEE Photovoltaic Specialists Conference > 2807 - 2810

2012 IEEE 38th Photovoltaic Specialists Conference (PVSC)

Photovoltaic devices integrated into smart windows can provide power necessary to tune the transparency of the windows for energy savings and environmental control. Both wide-bandgap polymer and oxide thin-films can provide visibility necessary through windows as well as voltage to drive the window to vary its transparency. Mini-modules including polymer bulk heterojunction solar cells have been fabricated...

article

Bruno Protein Contains an Expanded RNA Recognition Motif

Angeline M. Lyon, Brad S. Reveal, Paul M. Macdonald, David W. Hoffman

Biochemistry > 2009 > 48 > 51 > 12202 - 12212

article

A Pseudocatenane Structure Formed between DNA and A Cyclic Bisintercalator

Yongjun Chu, David W. Hoffman, Brent L. Iverson

Journal of the American Chemical Society > 2009 > 131 > 10 > 3499 - 3508

article

The Crystal Structure of Spermidine/Spermine N ¹ -Acetyltransferase in Complex with Spermine Provides Insights into Substrate Binding and Catalysis ^† ^, ^‡

Eric J. Montemayor, David W. Hoffman

Biochemistry > 2008 > 47 > 35 > 9145 - 9153

article

Domain C of Human Poly(ADP-ribose) Polymerase-1 Is Important for Enzyme Activity and Contains a Novel Zinc-Ribbon Motif ^† ^, ^‡

Zhihua Tao, Peng Gao, David W. Hoffman, Hung-wen Liu

Biochemistry > 2008 > 47 > 21 > 5804 - 5813

article

Structural Characterization of a Rigidified Threading Bisintercalator

Yongjun Chu, Steven Sorey, David W. Hoffman, Brent L. Iverson

Journal of the American Chemical Society > 2007 > 129 > 5 > 1304 - 1311

article

Global metabolic changes following loss of a feedback loop reveal dynamic steady states of the yeast metabolome

Peng Lu, Anupama Rangan, Sherwin Y. Chan, Dean R. Appling, more

Metabolic Engineering > 2007 > 9 > 1 > 8-20

Metabolic enzymes control cellular metabolite concentrations dynamically in response to changing environmental and intracellular conditions. Such real-time feedback regulation suggests the global metabolome may sample distinct dynamic steady states, forming “basins of stability” in the energy landscape of possible metabolite concentrations and enzymatic activities. Using metabolite, protein and transcriptional...

article

Solution Structure of a Conserved Domain of Antizyme: A Protein Regulator of Polyamines ^† ^, ^‡

David W. Hoffman, Donald Carroll, Nadia Martinez, Marvin L. Hackert

Biochemistry > 2005 > 44 > 35 > 11777 - 11785

article

The Hydratase Activity of Malonate Semialdehyde Decarboxylase: Mechanistic and Evolutionary Implications

Gerrit J. Poelarends, Hector Serrano, William H. Johnson, David W. Hoffman, more

Journal of the American Chemical Society > 2004 > 126 > 48 > 15658 - 15659

article

Crystal Structure of Archaeal Ribonuclease P Protein aRpp29 from Archaeoglobus fulgidus ^† ^, ^‡

David J. Sidote, Johanna Heideker, David W. Hoffman

Biochemistry > 2004 > 43 > 44 > 14128 - 14138

article

NMR Structural Analysis of a Modular Threading Tetraintercalator Bound to DNA

Jeeyeon Lee, Vladimir Guelev, Steven Sorey, David W. Hoffman, more

Journal of the American Chemical Society > 2004 > 126 > 43 > 14036 - 14042

article

Annual Review of NMR Spectroscopy. Volume 46 Edited by G. A. Webb (Royal Society of Chemistry, London). Academic Press: San Diego, London. 2002. x + 218 pp. $134.00. ISBN 0-12-505446-7.

David W. Hoffman

Journal of the American Chemical Society > 2004 > 126 > 2 > 694 - 694

article

The Crystal Structure of the N-terminal Region of the Alpha Subunit of Translation Initiation Factor 2 (eIF2α) from Saccharomyces cerevisiae Provides a View of the Loop Containing Serine 51, the Target of the eIF2α-specific Kinases

Simrit Dhaliwal, David W. Hoffman

Journal of Molecular Biology > 2003 > 334 > 2 > 187-195

The α subunit of translation initiation factor 2 (eIF2α) is the target of specific kinases that can phosphorylate a conserved serine residue as part of a mechanism for regulating protein expression at the translational level in eukaryotes. The structure of the 20 kDa N-terminal region of eIF2α from Saccharomyces cerevisiae was determined by X-ray crystallography at 2.5Å resolution. In most respects,...

article

NMR Structure of an Archaeal Homologue of Ribonuclease P Protein Rpp29 ^†

David J. Sidote, David W. Hoffman

Biochemistry > 2003 > 42 > 46 > 13541 - 13550

article

Solution Structure of a Luteoviral P1-P2 Frameshifting mRNA Pseudoknot

Paul L. Nixon, Anupama Rangan, Y.-G. Kim, Alexander Rich, more

Journal of Molecular Biology > 2002 > 322 > 3 > 621-633

A hairpin-type messenger RNA pseudoknot from pea enation mosaic virus RNA1 (PEMV-1) regulates the efficiency of programmed -1 ribosomal frameshifting. The solution structure and ¹ ⁵ N relaxation rates reveal that the PEMV-1 pseudoknot is a compact-folded structure composed almost entirely of RNA triple helix. A three nucleotide reverse turn in loop 1 positions a protonated cytidine, C...

article

SmpB: A Protein that Binds to Double-Stranded Segments in tmRNA and tRNA ^†

Jacek Wower, Christian W. Zwieb, David W. Hoffman, Iwona K. Wower

Biochemistry > 2002 > 41 > 28 > 8826 - 8836

article

Structure of the β Subunit of Translation Initiation Factor 2 from the Archaeon Methanococcus jannaschii : A Representative of the eIF2β/eIF5 Family of Proteins ^† ^, ^‡

Seongeun Cho, David W. Hoffman

Biochemistry > 2002 > 41 > 18 > 5730 - 5742

article

Changing DNA Grooves − A 1,4,5,8-Naphthalene Tetracarboxylic Diimide Bis-Intercalator with the Linker (β-Ala) ₃ -Lys in the Minor Groove

Vladimir Guelev, Steven Sorey, David W. Hoffman, Brent L. Iverson

Journal of the American Chemical Society > 2002 > 124 > 12 > 2864 - 2865

article

Peptide bis-intercalator binds DNA via threading mode with sequence specific contacts in the major groove

Vladimir Guelev, Jeeyeon Lee, Jonathan Ward, Steven Sorey, more

Chemistry & Biology > 2001 > 8 > 5 > 415-425

Background: We previously described a general class of DNA polyintercalators in which 1,4,5,8-naphthalenetetracarboxylic diimide (NDI) intercalating units are connected via peptide linkers, resulting in the first known tetrakis- and octakis-intercalators. We showed further that changes in the composition of the peptide tether result in novel DNA binding site specificities. We now examine in detail...

Publication date

Set your own date range

Publication type

article (25)
book (1)

Keywords

L9 (2)
NMR (2)
RIBOSOMAL PROTEIN (2)
RNA (2)
RNA BINDING (2)
RNA PSEUDOKNOT (2)
1,4,5,8-NAPHTHALENETETRACARBOXYLIC DIIMIDE (1)
ABSTRACTS (1)
AMIDE PROTON EXCHANGE (1)
BACTERIOPHAGE T4 GENE 32 (1)
BASE QUADRUPLE (1)
BIOREMEDIATION (1)
CATHODES (1)
COPPER OXIDE (1)
CRYSTAL STRUCTURE (1)
DNA RECOGNITION (1)
EIF2 (1)
FRAMESHIFT (1)
INITIATION FACTOR (1)
MAJOR GROOVE BINDING (1)
MASS SPECTROMETRY (1)
METABOLIC PROFILING (1)
METABOLOMICS (1)
METHYLIBIUM PETROLEIPHILUM (1)
MODEL-FREE DYNAMICS (1)
NITROGEN-15 NMR (1)
NUCLEAR MAGNETIC RESONANCE (1)
ONE CARBON METABOLISM (1)
OPTICAL DEVICE FABRICATION (1)
OPTICAL FILMS (1)
OXIDE SOLAR CELL (1)
PHOSPHORYLATION SITE (1)
POLYMER SOLAR CELL (1)
PROTEIN DYNAMICS (1)
PROTEIN STABILITY (1)
PROTONATED CYTIDINE (1)
PSEUDOKNOT (1)
RADIO FREQUENCY (1)
RETROVIRUS (1)
RIBOSOMAL PROTEIN L9; PROTEIN CRYSTAL STRUCTURE; NMR (1)
RNA FOLDING (1)
RNA STRUCTURE (1)
RNA TRIPLE HELIX (1)
SEMI-TRANSPARENT PV (1)
SMART WINDOWS (1)
TAUTOMERASE (1)
THERMODYNAMICS (1)
THREADING INTERCALATION (1)
THREE-DIMENSIONAL NMR (1)
TRANSLATION (1)
USA COUNCILS (1)
X-RAY CRYSTALLOGRAPHY (1)
more

Data set

ACS (14)
Elsevier (10)
ieee (1)
Springer (1)

Journal

Biochemistry (8)
Journal of Molecular Biology (7)
Journal of the American Chemical Society (6)
Archives of Biochemistry and Biophysics (1)
Chemistry & Biology (1)
Journal of Biomolecular NMR (1)
Metabolic Engineering (1)

INFONA - science communication portal

Search results for: David W. Hoffman

Structural and kinetic characterization of two 4-oxalocrotonate tautomerases in Methylibium petroleiphilum strain PM1

Semi-transparent photovoltaic devices for smart window applications

Bruno Protein Contains an Expanded RNA Recognition Motif

A Pseudocatenane Structure Formed between DNA and A Cyclic Bisintercalator

The Crystal Structure of Spermidine/Spermine N ¹ -Acetyltransferase in Complex with Spermine Provides Insights into Substrate Binding and Catalysis ^† ^, ^‡

Domain C of Human Poly(ADP-ribose) Polymerase-1 Is Important for Enzyme Activity and Contains a Novel Zinc-Ribbon Motif ^† ^, ^‡

Structural Characterization of a Rigidified Threading Bisintercalator

Global metabolic changes following loss of a feedback loop reveal dynamic steady states of the yeast metabolome

Solution Structure of a Conserved Domain of Antizyme: A Protein Regulator of Polyamines ^† ^, ^‡

The Hydratase Activity of Malonate Semialdehyde Decarboxylase: Mechanistic and Evolutionary Implications

Crystal Structure of Archaeal Ribonuclease P Protein aRpp29 from Archaeoglobus fulgidus ^† ^, ^‡

NMR Structural Analysis of a Modular Threading Tetraintercalator Bound to DNA

Annual Review of NMR Spectroscopy. Volume 46 Edited by G. A. Webb (Royal Society of Chemistry, London). Academic Press: San Diego, London. 2002. x + 218 pp. $134.00. ISBN 0-12-505446-7.

The Crystal Structure of the N-terminal Region of the Alpha Subunit of Translation Initiation Factor 2 (eIF2α) from Saccharomyces cerevisiae Provides a View of the Loop Containing Serine 51, the Target of the eIF2α-specific Kinases

NMR Structure of an Archaeal Homologue of Ribonuclease P Protein Rpp29 ^†

Solution Structure of a Luteoviral P1-P2 Frameshifting mRNA Pseudoknot

SmpB: A Protein that Binds to Double-Stranded Segments in tmRNA and tRNA ^†

Structure of the β Subunit of Translation Initiation Factor 2 from the Archaeon Methanococcus jannaschii : A Representative of the eIF2β/eIF5 Family of Proteins ^† ^, ^‡

Changing DNA Grooves − A 1,4,5,8-Naphthalene Tetracarboxylic Diimide Bis-Intercalator with the Linker (β-Ala) ₃ -Lys in the Minor Groove

Peptide bis-intercalator binds DNA via threading mode with sequence specific contacts in the major groove

Filter options

Publication date

Publication type

Keywords

Data set

Journal

INFONA - science communication portal

Search results for: David W. Hoffman

Add recipient

Sending message cancelled

Are you sure you want to cancel sending this message?

Send message

Filter options

Publication date

Date range setting

Set the date range to filter the displayed results. You can set a starting date, ending date or both. You can enter the dates manually or choose them from the calendar.

Publication type

Keywords

Data set

Journal

Reporting an error / abuse

Sending the report failed

Accessibility options